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PUBLIKACJE PRACOWNIKÓW ICM

Publikacje UW http://bibliografia.icm.edu.pl




2005

     
  1. A comprehensive update of the sequence and structure classification of kinases. Krzysztof Ginalski, S Cheek, H Zhang, N Grishin, BIOMED CENTRAL STRUCTURAL BIOLOGY Tom 5 Nr 1, 2005, str. 6-6 (Artykuł)

  2. A support vector machine approach to the identification of phosphorylation sites, Dariusz Plewczyński, Adrian Tkacz, Adam Godzik, Leszek Rychlewski, CELLULAR & MOLECULAR BIOLOGY LETTERS Tom 10, 2005, str. 73-89 (Artykuł)

  3. AutoMotif server: prediction of single residue post-translational modifications in proteins, Dariusz Plewczyński, Adrian Tkacz, Lucjan Wyrwicz, Leszek Rychlewski BIOINFORMATICS Tom 21, 2005, str. 2525-2527 (Artykuł)

  4. Exploring Assembly Energetics of the 30S Ribosomal Subunit Using an Implicit Solvent Approach, Joanna Trylska, J McCammon, Charles Brooks, JOURNAL OF ANALYTICAL CHEMISTRY Tom 1 Nr 1, 2005, str. 1-1 (Artykuł)

  5. Exploring Global Motions and Correlations in the Ribosome, Joanna Trylska, Valentina Tozzini, J McCammon, BIOPHYSICAL JOURNAL Tom 1 Nr 1, 2005, str. 1-1 (Artykuł)

  6. Identification of novel restriction endonuclease-like fold families among hypothetical proteins, Krzysztof Ginalski, Leszek Rychlewski, L Kinch, N Grishin, NUCLEIC ACIDS RESEARCH Tom 33 Nr 11, 2005, str. 3598-3605 (Artykuł)

  7. Practical lessons from protein structure prediction, Krzysztof Ginalski, Leszek Rychlewski, N Grishin, Adam Godzik, NUCLEIC ACIDS RESEARCH Tom 33 Nr 6, 2005, str. 1874-1891 (Artykuł)

  8. Protein domain of unknown function DUF1023 is an alpha/beta hydrolase, Krzysztof Ginalski, M Zheng, Leszek Rychlewski, N Grishin, PROTEINS-STRUCTURE FUNCTION AND GENETICS Tom 59 Nr 1, 2005, str. 1-6 (Artykuł)

  9. Support Vector Machine Classification of Linear Functional Motifs in Proteins, Dariusz Plewczyński, Adrian Tkacz, Lucjan Wyrwicz, Adam Godzik, Andrzej Kloczkowski, Leszek Rychlewski, JOURNAL OF MOLECULAR MODELING Tom 1 Nr 1, 2005, str. 1-1 (Artykuł)

2004

     
  1. A Java-implementation of a genetic semihomology algorithm (GEISHA), and its applications for analyses of selected protein families, Adam Górecki, Jacek Leluk, Bogdan Lesyng, EUROPEAN JOURNAL OF BIOCHEMISTRY, Tom 271 Nr Supplement, 2004, str. 30-30 (Komunikat)

  2. A Mathematical Model of Local Stimulation of Perfusion by Vasoactive Agent Diffusing From Tissue Surface, Jacek Waniewski, CARDIOVASCULAR ENGINEERING AN INTERNATIONAL JOURNAL, Tom 4 Nr 1, 2004, str. 115-123.

  3. A method for the analysis of the geometrical relationship between white matter pathology and the vascular architecture of the brain, Dorota Kozińska, C. Holland, K. Krissian, C. Westin, C. Guttman, NEUROIMAGE, Tom 22 Nr 4, 2004, str. 1671-1678

  4. A new approach to sequence comparison and similarity estimation, Jacek Leluk, Artur Mikołajczyk, EUROPEAN JOURNAL OF BIOCHEMISTRY, Tom 271 Nr Supplement, 2004, str. 29-29 (Komunikat)

  5. Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity, Tim Rand, Krzysztof Ginalski, Nick Grishin, Xiaodong Wang, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Nr 101, 2004, str. 14385-14389

  6. BOF: a novel family of bacterial OB-fold proteins, Krzysztof Ginalski, Lisa Kinch, Leszek Rychlewski, Nick Grishin, FEBS LETTERS Nr 567, 2004, str. 297-301.

  7. BTLCP proteins: a novel family of bacterial transglutaminase-like cysteine proteinases, Krzysztof Ginalski, Lisa Kinch, Leszek Rychlewski, Nick Grishin, TRENDS IN BIOCHEMICAL SCIENCES, Nr 29, 2004, str. 392-395.

  8. Class IV Charge Model for the Self-Consistent Charge Density-Functional Tight-Binding Method, Jarosław Kalinowski, Bogdan Lesyng, Jason Thompson, Christopher Cramer, Donald Truhlar, JOURNAL OF PHYSICAL CHEMISTRY A, Tom 108, 2004, str. 2545-2549.

  9. Computations of an Unsteady Viscious Flow in a Three-dimensional System of Ducts. Part II, Jacek Szumbarski, Piotr Olszewski, Konrad Wawruch, Zbigniew Małota, Journal of Theoretical and Applied Mechanics, Tom 42, Nr 4, 2004, str. 869-903.

  10. Construction of consensus sequences of the b-spectrin family with variable parameter-thresholds and validation of the applied procedure, Anna Fogtman, Jacek Leluk, Bogdan Lesyng, EUROPEAN JOURNAL OF BIOCHEMISTRY, Tom 271, Nr Supplement, 2004, str. 29-30.

  11. DCC proteins: a novel family of thiol-disulfide oxidoreductases, Krzysztof Ginalski, Lisa Kinch, Leszek Rychlewski, Nick Grishin, TRENDS IN BIOCHEMICAL SCIENCES, Nr 29, 2004, str. 339-342.

  12. Detecting distant homology with Meta-BASIC, Krzysztof Ginalski, Marcin von Grotthuss, Nick Grishin, Leszek Rychlewski, NUCLEIC ACIDS RESEARCH, Nr 32, 2004, str. 576-581.

  13. Differential Inequalities for General Fluid Motions Bounded by a Free Surface, Ewa Zdarzyńska, Wojciech Zaj±czkowski, Journal of Applied Analysis (Heldermann-Verlag i Politechnika Łódzka), Tom 10, Nr 1, 2004, str. 131-168.

  14. Dynamic Stability and Spatial Hetergeneity in the Individual-Based Modelling of a Lotka_Volterra GAS, Jacek Waniewski, Wojciech Jędruch, Norbert Żołek, INTERNATIONAL JOURNAL OF APPLIED MATHEMATICS AND COMPUTER SCIENCE, Tom 14, Nr 2, 2004, str. 139-147.

  15. ECEPE proteins: a novel family of eukaryotic cysteine proteinases, Krzysztof Ginalski, Tomasz Zemojtel, TRENDS IN BIOCHEMICAL SCIENCES, Nr 29, 2004, str. 524-526.

  16. Fast QM/ MM method and its application to molecular systems, Łukasz Walewski, Piotr Bała, M. Elstner, Th. Frauenheim, Bogdan Lesyng, CHEMICAL PHYSICS LETTERS, Tom 397, 2004, str. 451-458.
  17. Comparison of Proteins Based on the Segment Structural Similarity, Dariusz Plewczyński, Jakub Pas, Marcin von Grotthuss, Leszek Rychlewski, ACTA BIOCHIMICA POLONICA, Tom 51, Nr 1, 2004, str. 161-172.

  18. First Prototype of the CrossGrid Testbed, J. Gomes, M. David, ... ..., Wojciech Wi¶licki, G. van Albada, LECTURE NOTES IN COMPUTER SCIENCE, Tom 2970, 2004, str. 67-77.

  19. Impact of the Surface Temperature and the Zonal Drift on the Orographic Bifurcation and Blocking in 2L-Baroclinic Model of the Troposphere, B. Brojewski, Bogumił Jakubiak, J.Jasiński, Journal of Technical Physics, Tom 45, Nr 3, 2004, str. 217-235.

  20. Integrated Web Service for Improving the Alignment Quality based on Segments Comparison, Dariusz Plewczyński, Leszek Rychlewski, Łukasz Jaroszewski, Yuzhen Ye, Adam Godzik, BMC BIOINFORMATICS, Tom 5, Nr 1, 2004, str. 98 / 1-7.

  21. Mutations in the yeast mrf1 gene encoding mitochondrial release factor inhibit translation on mitochondrial ribosomes, Joanna Towpik, Agnieszka Chacińska, Małgorzata Cie¶la, Krzysztof Ginalski, Magdalena Boguta, JOURNAL OF BIOLOGICAL CHEMISTRY, Nr 279, 2004, str. 14096-14103.

  22. Physical and computer modelling of blood flow in a systemic-to-pulmonary shunt, Zbigniew Małota, Z Nawrat, P Kostka, J Mizerski, Krzysztof Nowiński, Jacek Waniewski, INTERNATIONAL JOURNAL OF ARTIFICIAL ORGANS, Tom 27, Nr 11, 2004, str. 990-999.

  23. Protein inhibitors of kinases - homology analysis, mechanisms of differentiation and correlated mutations, Agata Meglicz, Jacek Leluk, Bogdan Lesyng, EUROPEAN JOURNAL OF BIOCHEMISTRY, Tom 271, Nr Supplement, 2004, str. 30-30. (Komunikat)

  24. Protein structure prediction for the male-specific region of the human Y chromosome, Krzysztof Ginalski, Leszek Rychlewski, David Baker, Nick Grishin, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Nr 101, 2004, str. 2305-2310.

  25. Raptor protein contains a caspase-like domain, Krzysztof Ginalski, Hong Zhang, Nick Grishin, TRENDS IN BIOCHEMICAL SCIENCES, Nr 29, 2004, str. 522-524.

  26. Seuence-structure mapping errors in the PDB: OB-fold domains, Ceslovas Venclovas, Krzysztof Ginalski, Chulhee Kang, PROTEIN SCIENCE, Nr 13, 2004, str. 1594-1602.

  27. Convergence to equilibrium for a parabolic problem with mixed boundary conditions in one space dimension, Maria Gokieli, Frederique Simondon, JOURNAL OF EVOLUTION EQUATIONS, Tom 3, 2004, str. 523-548

  28. Feature Synthesis and Extraction for the Construction of Generalized Properties of Amino Acids, Witold Rudnicki, Jan Komorowski, LECTURE NOTES IN ARTIFICIAL INTELLIGENCE, Tom 3066, 2004, str. 786-791

  29. Statistical thermodynamics for choice models on graphs,Arkadiusz Majka, Wojciech Wi¶licki, PHYSICA A Tom 337, 2004, str. 645-663

  30. The role of hydrogen bonding in the enzymatic reaction catalyzed by HIV-1 protease, Joanna Trylska, Paweł Grochowski, J McCammon, PROTEIN SCIENCE, Tom 13, 2004, str. 513-528.

  31. Proteins with Spectrin Motifs Which Do Not Belong to the Spectrin-a-Actinin-Dystrophin Family, Maciej Kukuła, Beata Hanus-Lorenz, Ewa Bok, Jacek Leluk, and Aleksander F. Sikorski, Z. NATURFORSCH., Tom 59c, 2004, str. 565-571.

  32. Bioinformatyka. Podręcznik do analizy genów i białek, Andreas Baxevanis (Redaktor), B.F. Oulette (Redaktor), Małgorzata Cebrat (Tłumacz), Jacek Leluk (Tłumacz), Paweł Mackiewicz (Tłumacz), Anna ¦rednicka (Redaktor),Jacek Leluk (Redaktor naukowy wersji polskiej), Wydawnictwo Naukowe PWN, 2004. (Ksi±żka)

  33. Global Special Regular solutions to the Navier-Stokes Equations in a Cylindrical Domain under Boundary Slip Conditions, Wojciech Zaj±czkowski, Gakkotosho Co., Ltd., 2004 (Ksi±żka)

  34. Analysis of geometrical relations between multiple sclerosis lesions and brain vasculature, Dorota Kozińska, C. Holland, K. Krissian, C. Westin, C. Guttmann, w: Physiology, Function, and Structure from Medical Images, str. 328-338, Amir A. Amini, Armando Manduca - SPIE, r. 2004 (Artykuł konferencyjny).

  35. Assimilation of the radar rainfall data using latent heat nudging technique Bogumił Jakubiak, w: Erad Publ. Series 2, str. 483-486, American Society of Emergency Radiology, r. 2004.

  36. Canonical Representations and Efficient Propagations Schemes for Quantum-Gaussian-Classical Dynamical Models, Paweł Grochowski, Bogdan Lesyng, w: 227th ACS Natiional Meeting, Anaheim, CA , March 28 - April 1, 2004, str. 315-315, American Chemical Society, Division of Physical Chemistry, r. 2004 (Komunikat).

  37. Genetic Paralog Analysis and Simulations, Stanisław Cebrat, Jan Radomski, Dietrich Stauffer. w: ICCS 2004, LNCS 3039, str. 709-717, Springer Verlag, r. 2004.

  38. Helmann-Feynman Forces and Symplectic Propagation Schemes for Quantum-Classical Molecular Dynamics, Paweł Grochowski, Bogdan Lesyng, w: Multiscale Computational Models for Biomedical Research, University of California San Diego, March 25-27, 2004 - Poster Abstracts, str. 4-5, University of California, r. 2004. (Komunikat)

2003

     
  1. Search for structural similarity in proteins, Jacek Leluk, Leszek Konieczny, Irena Roterman, BIOINFORMATICS Tom 19 Nr 1 (2003), 117-124.

  2. Numerical schemes for process simulation: software for coupling pattern recognition to process modelling, Wouter Zijl, Anna Trykozko, in: Rosenbaum M.S., Turner A.K. (eds) "Characterisation of the Shallow Subsurface: Implications for Urban Infrastructure and Environmental Assessment", Springer-Verlag, Duesseldorf (2003), 115-128.

  3. Uniformity of the phase space and fluctuations in thermal equilibrium, Arkadiusz Majka, Wojciech Wi¶licki, PHYSICA A Tom 322 (2003), 313-328.

  4. A comparative study of the primary structures of protein and sugar kinases, Jacek Leluk, Bogdan Lesyng, CELLULAR & MOLECULAR BIOLOGY LETTERS Tom 8, Nr 2A (2003), 620-621, (Komunikat).

  5. A protein isolated from Escherichia coli, identified as GroEL, reacts with anti-beta spectrin antibodies, Aleksander Czogalla, Paulina Kwolek, Anita Hryniewicz-Jankowska, Małgorzata Nietubyć, Jacek Leluk, Aleksander Sikorski, ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, Tom 415 (2003), 94-100.

  6. Comparative studies of sugar and protein kinases: genetic relationships and consensus sequences, Anna Zdyb, Jacek Leluk, CELLULAR & MOLECULAR BIOLOGY LETTERS, Tom 8, Nr 2A (2003), 593-593 (Komunikat).

  7. Fotoenzym oksydoreduktaza: NADPH-protochlorofilid (LPOR) - klucz do biosyntezy chlorofilu, Barbara Bereza, Agnieszka Kubiak, Jacek Leluk, Wacław Hendrich, POSTĘPY BIOCHEMII, Tom 49, Nr 1 (2003), 46-55.

  8. Mathematical Treatement of Phase Separation with Order-Disorder Structure in Binary Miztures, A. Ito, N. Kenmochi, Marek Niezgódka, Advances in Mathematical Sciences and Applications, Tom 13, Nr 1 (2003), 357-385.

  9. Discrete Approximation of the Cahn-Hilliard/ Allen-Cahn System with Logarithmic Entropy, Maria Gokieli, Leszek Marcinkowski,  JAPAN JOURNAL OF INDUSTRIAL AND APPLIED MATHEMATICS Tom 20 Nr 3 r. 2003, str. 321-351 (Artykuł).

  10. Prediction of Secondary Ionization of the Phosphate Group in phosphotyrosine peptides, Michał Wojciechowski, Tomasz Grycuk, Jan Antosiewicz, Bogdan Lesyng,  BIOPHYSICAL JOURNAL Tom 84 Nr 2 r. 2003, 750-756 (Artykuł)

  11. Quantum and Quantum-Classical Sudies of Phosphoryl-Transfer Mechanisms in Model Systems, Paweł Grochowski,   CELLULAR & MOLECULAR BIOLOGY LETTERS, Tom 8 Nr 2A r. 2003, 617-618 (Komunikat)

  12. SCC DFT-TB Energy Calculations of the Phosphoryl Transfer Reaction in the PKA Active Site, Franciszek Rakowski, Paweł Grochowski, Bogdan Lesyng, CELLULAR & MOLECULAR BIOLOGY LETTERS Tom 8 Nr 2A r. 2003, str. 603-604 (Komunikat)

  13. EUROGRID - European Computational Grid Testbed, Bogdan Lesyng, Piotr Bała, D. Erwin, JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING 63 (5), 590-596, 2003

  14. Theoretical studies on sugar and protein kinases: Structural and mutational variability, Jacek Ku¶ka, Jacek Leluk, CELLULAR & MOLECULAR BIOLOGY LETTERS, Tom 8, Nr 2A (2003), 592-592 (Komunikat).

  15. Analiza porównawcza białek homologicznych na przykładzie kinaz, Jacek Leluk, Bogdan Lesyng, w: Materiały konferencyjne: II Krajowy Kongres Biotechnologii, 23-27 czerwca 2003, Politechnika Łódzka (2003), 235-235 (Komunikat).

  16. Badania nad struktur± i zmienno¶ci± mutacyjn± kinaz, Jacek Ku¶ka, Jacek Leluk, w: Materiały konferencyjne: II Krajowy Kongres Biotechnologii, 23-27 czerwca 2003, Politechnika Łódzka (2003), 75-75 (Komunikat).

  17. Kinazy - analiza porównawcza, relacje genetyczne i sekwencja integruj±ca, Anna Zdyb, Jacek Leluk, w: Materiały konferencyjne: II Krajowy Kongres Biotechnologii, 23-27 czerwca 2003, Politechnika Łódzka (2003), 75-75 (Komunikat).

  18. Extended Hellmann-Feynman Forces, Canonical Representations, and Exponential Propagators in the Mixed Quantum-Classical Molecular Dynamics, Paweł Grochowski, Bogdan Lesyng, JOURNAL OF CHEMICAL PHYSICS, Tom 119 Nr 22 (2003), 11541-11555.

  19. Modelling Tumor-Immunity Interactions with Different Simulation Functions, Petar Zhivkov, Jacek Waniewski, Journal of Applied Mathematics and Computer Science, Tom 13 Nr 3 (2003), 307-315.

  20. Probabilistic Problems in Atmospheric and Water Sciences, Krzysztof Haman, Bogumił Jakubiak, Jerzy Zabczyk (Eds.), Wydawnictwa ICM (2003).

  21. Bifurcation Analysis of a Simple Model for Tumor-Immune System Interaction, Petar Zhivkov, Jacek Waniewski, w: Krajowa Konferencja Zastosowań Matematyki w Bilogii i Medycynie, Piwniczna, 9-13 September 2003, Instytut Matematyki Uniwersytetu Jagiellońskiego (2003), str. 101-106.

  22. Meteorological data assimilation as a filtering problem, Bogumił Jakubiak, w: Probabilistic Problems in Atmospheric and Water Sciences, Wydawnictwa ICM (2003), 131-138.

  23. Wrong assumptions and misinterpretations in molecular biology, bichemistry and bioinformatics, Jacek Leluk, w: Gliwice Scientific Meetings 2003 (Book of Abstracts), Centrum Onkologii - Instytut M. Skłodowskiej-Curie Oddział w Gliwiciach (2003), 16-16 (Komunikat).
     

2002

     
  1. Anonimowo¶ć w Sieci - remailery, Janusz Urbanowicz, LINUX+ Nr 57 (2002), 32-35

  2.  
  3. Complementary finite element methods applied to the numerical homogenization of 3D absolute permeability, Anna Trykozko, Wouter Zijl, COMMUNICATIONS IN NUMERICAL METHODS IN ENGINEERING 18 (2002), 31-41

  4.  
  5. Correlated Mutations in Selected Protein Families, Jacek Leluk, Monika Sobczyk, Łukasz Becella, TASK QUARTERLY (SCIENTIFIC BULLETIN OF THE ACADEMIC COMPUTER CENTER IN GDANSK) Tom 6 Nr 3 (2002), 469-482

  6.  
  7. Determinants in Nuclease Specificity of Ape1 and Ape2, Human Homologues of Escherichia coli Exonuclease III, Masood Hadi, Krzysztof Ginalski, Lam Nguyen, David Wilson III, JOURNAL OF MOLECULAR BIOLOGY 316 (2002), 853-866

  8.  
  9. DFT Calculations and Parameterization of the Approximate Valence Bond Method to Describe the Phosphoryl Transfer Reaction in a Model System, Krzysztof Ginalski, Paweł Grochowski, Bogdan Lesyng, David Shugar, INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY 90 (2002), 1129-1139

  10.  
  11. Distributed Modeling of Diffusive Solute Transport in Peritoneal Dialysis, Jacek Waniewski, ANNALS OF BIOMEDICAL ENGINEERING 30 (2002), 1181-1195

  12.  
  13. Global attractor for the Cahn-Hilliard/ Allen-Cahn system , Maria Gokieli, A Ito, NONLINEAR ANALYSIS-THEORY METHODS & APPLICATIONS 52 Nr 7 (2002), 1821-1841

  14.  
  15. Mathematical Models for Evaluation, Optimization, and Control of Artificial Kidney Therapy, Jacek Waniewski, JOURNAL OF MEDICAL INFORMATICS & TECHNOLOGIES3 (2002), 27-39

  16.  
  17. Molecular Dynamics Simulations of the First Steps of the Reaction Catalyzed by HIV-1 Protease, Joanna Trylska, Piotr Bała, Maciej Geller, Paweł Grochowski, BIOPHYSICAL JOURNAL 83 Nr 2 (2002), 794-807

  18.  
  19. Numerical homogenization of two-phase flow in porous media, Wouter Zijl, Anna Trykozko, COMPUTATIONAL GEOSCIENCES 6 (2002), 49-71

  20.  
  21. On local in time existence for the Dirichlet problem for equations of compressile viscous fluids, Piotr Mucha, Wojciech Zajączkowski, Annales Polonici Mathematici 78 (2002), 227-239

  22.  
  23. On the existence for the Dirichlet problem for the compressible linearized Navier-Stokes system in the Lp-framework, Piotr Mucha, Wojciech Zajączkowski, Annales Polonici Mathematici 78 (2002), 241-260

  24.  
  25. Mathematical Aspects of Modelling Structure Formation Phenomena, Gakkotosho Co. Ltd., (2002), N. Kenmochi (Wydawca), Marek Niezgódka (Wydawca), M Otani (Wydawca)

  26.  
  27. Research Works based on the ICM, Wydawnictwa ICM, (2002), Bogumił Jakubiak (Wydawca), Barbara Kleyny (Redaktor)

  28.  
  29. Asymptotic behaviour of a phase-field model of phase transformations, Maria Gokieli, A Ito, in: Mathematical Sciences and Applications, Mathematical Aspects of Modelling Structure Formation Phenomena, Gakkotosho, (2002), 163-172

  30.  
  31. Developing and Testing of Quantum-Gaussian Dynamics for Future Simulations of Enzymatic Processes , Paweł Grochowski, Bogdan Lesyng, in: XIV International Biophysics Congress - Abstracts, International Union for Pure and Applied Biophysics, Sociedad Argentina de Biofisica, (2002), 68-68, (Komunikat)

  32.  
  33. Model Output Statistics in Application to Daily Extreme Temperatures, Małgorzata Melonek, in: Research works based on the ICMs UMPL numerical weather prediction system results, Wydawnictwa ICM, r. 2002, 123-131

  34.  
  35. Numerical solution of coupled Cahn--Hilliard and Allen--Cahn equations with logarithmic entropy, Maria Gokieli, Leszek Marcinkowski, in: Mathematical Aspects of Modelling Structure Formation Phenomena, Gakkotosho co., Ltd., (2002), 173-182

  36.  
  37. Precipitation, Wind and Daily Extreme Temperatures Skill Scores, Katarzyna Starosta, in: Research works based on the ICMs UMPL numerical weather prediction system results, Wydawnictwa ICM, (2002), 146-156

  38.  
  39. PRESTO - Precision Weather Forecast System for Different Types of Transport, Krzysztof Nowiński, Bogumił Jakubiak, Aleksander Nowiński, in: Research works based on the ICMs UMPL numerical weather prediction system results, Wydawnictwa ICM, (2002), 28-34

  40.  
  41. Quantum-Classical Molecular Dynamics Simulations of the First Steps of the Reaction Catalyzed by HIV-1 Protease, Joanna Trylska, Piotr Bała, Maciej Geller, Paweł Grochowski, in: IX International Biophysics Congress - abstracts, (2002), 61-61, (Komunikat)

  42.  
  43. Quantum-Mechanical Studies of Phosphate Transfer Reactions, Krzysztof Ginalski, Paweł Grochowski, Franciszek Rakowski, Bogdan Lesyng, in: XIV International Biophysics Congress - Abstracts, International Union for Pure and Applied Biophysics, Sociedad Argentina de Biofisica, (2002), 67-68, (Komunikat)

  44.  
  45. Scientific Aspects of a Numerical Weather Prediction at ICM, Marek Niezgódka, Bogumił Jakubiak, in: Research works based on the ICMs UMPL numerical weather prediction system results, Wydawnictwa ICM, (2002), 7-13

  46.  
  47. Simulation of the Mitochondrial DNA Selection Mechanisms, Jan Radomski, S de Oliveira, in: Mathematical Aspects of Modelling Structure Formation Phenomena, Gakkotosho Co., Ltd., (2002), 336-352

  48.  
  49. Structural Determinants in Nuclease Specifity of Human EXOIII-like Proteines: APE1 and APE2, Krzysztof Ginalski, M Hadi, L Nguyen, J Bujnicki, L Rychlewski, D Wilson III, in: Book of Abstracts: 32nd Annual Meting of European Environmental Mutagen Society. September 3-7, 2002, Warsaw, Poland, EEMS Polish Section, (2002), 34-34, (Komunikat)

  50.  
  51. Towards Variational Data Assimilation at ICM, Bogumił Jakubiak, in: Research works based on the ICMs UMPL numerical weather prediction system results, Wydawnictwa ICM, (2002) 62-71

  52.  
  53. UMPL - the Numerical Weather Prediction System for Operational Applications, Leszek Herman-Iżycki, Bogumił Jakubiak, Krzysztof Nowiński, Bartosz Niezgódka, in: Research works based on the ICMs UMPL numerical weather prediction system results, Wydawnictwa ICM, (2002) 14-27

  54.  
  55. Uncertainty in Land Cover Mapping from Remotely Sensed Data using Textural Algorithm and Artificial Neural Networks, Anna Jakomulska, Jan Radomski, in: Uncertainty in Remote Sensing and GIS, John Wiley & Sons Ltd, (2002), 99-118

2001

     
  1. Arithmetic operations on DNA - subtraction

  2. P Wasiewicz, J Mulawka, Witold Rudnicki , Bogdan Lesyng, in: 7th International Meeting on DNA Based Computers, Univ. South Florida (2001)
     
  3. Automatic alignment of EEG/MEG and MRI data sets,

  4. Dorota Kozińska , F Carducci, Krzysztof Nowiński, CLINICAL NEUROPHYSIOLOGY 112 (2001), 1553-1561
     
  5. Cancerous tumor: The high frequency of a rare event

  6. Serge Galam, Jan Radomski, PHYSICAL REVIEW E 63, 5 (2001), 1907-1907
     
  7. Genomic style of proteins: concepts, methods and analyses of ribosomal proteins from 16 microbial species

  8. Piotr Słonimski, Jan Radomski, FEMS MICROBIOLOGY REVIEWS 25 (2001), 425-435
     
  9. Modelling the 3D structure of protein kinase C gamma and its interaction with specific Inhibitor, chelerythrine

  10. Paweł Brodacki, Krzysztof Ginalski, Bogdan Lesyng, CELLULAR & MOLECULAR BIOLOGY LETTERS 6, 2B (2001), 548-548
     
  11. Molecular properties of a bis(1,1-diphenylallenylidene)-octacarbonyltriiron complex obtained by symmetric cleavage from 1,1,6,6-tetraphenylhexapenttaene. Idealized symmetry studied in synperiplanar and synclinal conformers by X-ray diffraction, NMR

  12. Andrzej Zimniak, Grzegorz Bakalarski, JOURNAL OF ORGANOMETALLIC CHEMISTRY 634 (2001), 198-208
     
  13. Molecular properties of a bis(ketoiminato)-bis(tricarbonyliron) complex obtained by symmetric cleavage from acetophenone azine. Idealized symmetry in anti and syn isomers studied by X-ray diffraction, NMR and density functional theory, Andrzej Zimniak, Grzegorz Bakalarski, JOURNAL OF MOLECULAR STRUCTURE 597 (2001), 211-221

  14.  
  15. Nodal and mixed finite elements for the numerical homogenization of 3D permeability

  16. Anna Trykozko, Wouter Zijl, Alain Bossavit, COMPUTATIONAL GEOSCIENCES 5 (2001), 61-84
     
  17. Numerical Homogenization of the Absolute Permeability Tensor Around a Well , Wouter Zijl, Anna Trykozko, SPE JOURNAL 5 (2001), 399-408

  18.  
  19. Numerical Homogenization of the Absolute Permeability Using the Conformal-Nodal and Mixed-Hybrid Finite Element Method

  20. Wouter Zijl, Anna Trykozko, TRANSPORT IN POROUS MEDIA 44 (2001), 33-62
     
  21. Onkogenic activation caused by point mutations in the kinase domain of the met proto-oncogene: Molecular modeling studies

  22. Maria Miller, Krzysztof Ginalski, Bogdan Lesyng, Noboru Nakaigawa, Laura Schmidt, Berton Zbar, CELLULAR & MOLECULAR BIOLOGY LETTERS 6, 2B (2001), 550-550
     
  23. Parametrization of the Approximate Valence Bond (AVB) Method to Describe Potential Energy Surface in the Reaction Catalyzed by HIV-1 Protease

  24. Joanna Trylska, Paweł Grochowski, Maciej Geller, INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY 82, 2 (2001), 86-103
     
  25. Quantum-mechanical calculations of the potential energy function for the phosphate transfer in model systems

  26. Krzysztof Ginalski, Paweł Grochowski, Bogdan Lesyng, CELLULAR & MOLECULAR BIOLOGY LETTERS 6, 2B (2001), 549-549
     
  27. Scaling in the Donangelo-Sneppen model for evolution of money

  28. D Stauffer, Jan Radomski, PHYSICA A 291 (2001), 583-586
     
  29. Simple model for ligand-macromolecule interactions

  30. Witold Rudnicki, Krzysztof Ginalski, CELLULAR & MOLECULAR BIOLOGY LETTERS 6, 2B (2001), 540-540
     
  31. Simulating the mitochondrial DNA inheritance

  32. PMC De Oliveira, S Moss de Oliveira, Jan Radomski, THEORY IN BIOSCIENCES 120 (2001), 77-86
     
  33. Social effects in simple computer model of aging

  34. Dietrich Stauffer, Jan Radomski, EXPERIMENTAL GERONTOLOGY 37 (2001), 175-180
     
  35. Structural basis of oncogenic activation caused by point mutations in the kinase domain of the MET proto-oncogene: Modeling studies

  36. Maria Miller, Krzysztof Ginalski, Bogdan Lesyng, N Nakaigawa, L Schmidt, B Zbar, PROTEINS-STRUCTURE FUNCTION AND GENETICS 44 (2001), 32-43
     
  37. Thermodynamic interpretation of the uniformity of the phase space probability measure

  38. Wojciech Wi?licki, JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL 34 (2001) 4663-4671
     
  39. Asymptotic behaviour of a phase-field model of phase transformations

  40. Maria Gokieli, A Ito, in: Mathematical Sciences and Applications (2001),17-18
     
  41. Numerical solution of coupled Cahn-Hilliard and Allen-Cahn equations with logarithmic entropy

  42. Maria Gokieli, Leszek Marcinkowski, in: Mathematical Sciences and Applications (2001), 24-25

 

2000

     
  1. A Mezoscopic Model of Nucleic Acids. Part 1. Lagrangian and Quaternion Molecular Dynamics

  2. Witold Rudnicki, Grzegorz Bakalarski, Bogdan Lesyng, JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 17, 6 (2000), 1097-1108
     
  3. A Mezoscopic Model of Nucleic Acids. Part 2. An Effective Potential Energy Function for DNA

  4. Maciej Maciejczyk, Witold Rudnicki, Bogdan Lesyng, JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 17, 6 (2000), 1109-1115
     
  5. Application of UMPL results for routine and scientific purposes

  6. Katarzyna Starosta, Bogumił Jakubiak LAM NEWSLETTER 29 (2000), 86-88
     
  7. A simple model for predicting the free energy of binding between anthracycline antibiotics and DNA

  8. Witold Rudnicki, M Kurzepa, T Szczepanik, Bogdan Lesyng, ACTA BIOCHIMICA POLONICA 47, 1 (2000), 1-9
     
  9. Fizyka i komputery u progu XXI wieku

  10. Bogdan Lesyng, POSTĘPY FIZYKI 51 (2000), 12-17
     
  11. Flow system analysis and homogenization for aquifer protection

  12. W Zijl, Anna Trykozko, ACTA GEOLOGICA POLONICA 43, 2 (2000), 203-222
     
  13. Genetic Manipulation and the Population's Fate

  14. K Lichota, A Pękalski, Jan Radomski, INTERNATIONAL JOURNAL OF MODERN PHYSICS C 11, 7 (2000), 1371-1381
     
  15. Ligand design package (LUDI - MSI) applied to known inhibitors of the HIV-1 protease. Test of performance

  16. Roman Bogacewicz, Joanna Trylska, Maciej Geller, ACTA POLONIAE PHARMACEUTICA-DRUG RESEARCH SUPPLEMENT 57, Supplement (2000), 25-28
     
  17. Molecular mechanics calculations of molecular and chiral recognition by cyclodextrins. Is it reliable? The selective complexation of decalins by beta-cyclodextrin

  18. H Dodziuk, O Łukin, Krzysztof Nowiński, JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM 503 (2000), 221-230
     
  19. Molecular structure and IR spectra of bromomethanes by DFT and post-Hartree-Fock MP2 and CCSD(T) calculations

  20. V Venkatraman, Józef Kwiatkowski, Grzegorz Bakalarski, J Leszczyński, MOLECULAR PHYSICS 98, 6 (2000), 371-386
     
  21. Molecular structure and vibrational spectrum of N-methylpyrrolidine betaine hydrogen chloride: experimental and DFT study

  22. M Szafran, J Koput, Z Dega-Szafran, Józef Kwiatkowski, VIBRATIONAL SPECTROSCOPY 23 (2000), 1-11
     
  23. Poisson-Boltzmann and Quantum-Classical Studies of Enzymatic Reactions

  24. Bogdan Lesyng, w: International Conference on Conformation of Peptides, Proteins and Nucleic Acids - Book of Abstracts, Uniwersytet Gdański, 2000, 44-44
     
  25. Quantum-Dynamical Picture of a Multi-Step Enzymatic Process. Reaction Catalyzed by Phospholipase A2

  26. Piotr Bała, Paweł Grochowski, Krzysztof Nowiński, Bogdan Lesyng, J McCammon, BIOPHYSICAL JOURNAL 79, 3 (2000), 1253-1262
     
  27. Rola modelowania w procesie poznawania i rozumienia struktury i dynamiki układów biomolekularnych

  28. Bogdan Lesyng, w: Materiały zjazdowe: Jubileuszowy Zjazd Naukowy Polskiego Towarzystwa Chemicznego i Stowarzyszenia Inżynierów i Techników Przemysłu Chemicznego, (2000), 303
     
  29. Simulating the Mitochondrial DNA Bottleneck

  30. Jan Radomski, S Oliveira, INTERNATIONAL JOURNAL OF MODERN PHYSICS C 11 (2000), 1297-1304
     
  31. Structure-based sequence alignment for the beta-trefoil subdomain of the clostridial neurotoxin family provides residue level information about the putative ganglioside binding site

  32. Krzysztof Ginalski, C Venclovas, Bogdan Lesyng, Krzysztof Fidelis, FEBS LETTERS 482 (2000), 119-124
     
  33. Theoretical Approach of Titration and pK Value Calculations of Phosphate Groups in Model Systems and Peptides

  34. Michał Wojciechowski, Tomasz Grycuk, Jan Antosiewicz, Bogdan Lesyng, w: International Conference on Conformation of Peptides, Proteins and Nucleic Acids - Book of Abstracts, Uniwersytet Gdański (2000) 59-59
     
  35. A Correlation Between Protonation Equilibria in Biomolecular Systems and their Shapes: Studies using a Poisson-Boltzmann Model

  36. Jan Antosiewicz, Elżbieta Błachut-Okrasińska, Tomasz Grycuk, Bogdan Lesyng, in: Free Boundary Problems. Theory and Applications, N. Kenmochi, (2000) 11-17
     
  37. A formal model of genomic DNA multiplication and amplification

  38. Jan Radomski, Jerzy Tiuryn, Piotr Słonimski, in: Comparative Genomics, Kluwer Academic Publishers (2000), 503-513
     
  39. Aggregation of Distributed Numerical Models for Limited-area Weather Forecasting

  40. Bogumił Jakubiak, Marek Niezgódka, Krzysztof Nowiński, in: ISThmus 2000 - Conference Proceedings: Research and Development for the Information Society, (2000)
     
  41. Alignment of Scalp Electrode Positions and MRI Data Sets. Weighted Geometrical Moments and Removing Outliers - Compensation of Incorrect Digitization of Head Surface Points

  42. Dorota Kozińska, Krzysztof Nowiński, in: Proceedings of World Congress on Medical Physics and Biomedical Engineering, (2000), 76408-76413
     
  43. Dynamics of Diffusive Phase Transitions Driven by Coupled Mechanisms

  44. Marek Niezgódka in: Lectures on Applied Mathematics, Springer Verlag, (2000), 103-107
     
  45. Effects of changes in parametrization on precipitation forecasts

  46. Bogumił Jakubiak, R Hodur, in: LAM Newsletter, Meteo, (2000), 124-127
     
  47. Extended Parametrization and Applications of an Approximate Valence Bond Method

  48. Paweł Grochowski, Joanna Trylska, Piotr Bała, Krzysztof Ginalski, Maciej Geller, Bogdan Lesyng, in: Conference: Computational Biophysics 2000, Nice, 13-15 June 2000, (2000), P36-P36
     
  49. Lagrangian and Quaternion Molecular Dynamics (LQMD). Model and Applications for Nucleic Acids

  50. Witold Rudnicki, Maciej Maciejczyk, Grzegorz Bakalarski, Bogdan Lesyng, in: Conference: Computational Biophysics 2000, Nice, 13-15 June 2000, (2000), N25-N25
     
  51. Molecular Structure and Vibrational IR Spectra of Fluoro, Chloro and Bromosubstituted Methanes, Silanes and Germanes: Quantum-Mechanical Ab Initio Studies

  52. Józef Kwiatkowski, J Leszczyński, in: Computational Chemistry: Reviews of Current Trends, World Scientific Publishing Co., (2000), 243-306
     
  53. Molecular Structure and Vibrational Raman and Infrared Spectra of Halogenosubstituted Phosphoryl and Thiophosphoryl Compounds: Quantum-mechanical DFT and post-Hartree-Fock MP2 calculations

  54. Józef Kwiatkowski, Joanna Majewska, Jerzy Leszczyński, Ramaiver Venkatraman, in: 9th Conference:Current Trends in Computational Chemistry, November 2000, Vicksburg, Mississipi, (2000), 96-99
     
  55. Parametrization of an Approximate Valence Bond Method for MD/ AVB Simulations of the Reaction of HIV-1 Protease

  56. Joanna Trylska, Paweł Grochowski, Piotr Bała, Maciej Geller, in: International Conference on Conformation of Peptides, Proteins and Nucleic Acids - Book of Abstracts, Uniwersytet Gdański, (2000), 76-76
     
  57. Phase transitions in cocoa butter

  58. Witold Rudnicki, Marek Niezgódka in: Free boundary problems, theory and applications II, 18, N. Kenmochi, Gahkotosho, Tokyo, Japan (2000), 409-417
     
  59. Some problems in data assimilation schemes

  60. Bogumił Jakubiak, Leszek Herman-Iżycki in: Proceedings of the IV International Symposium on Military Meteorology "Hydro-Meteorological Support of Alied Forces and PfP Members Tasks Realization" (2000), 133-138
     
  61. Specific Interactions Between DNA and Anthracyclic Antybiotics. Application of the New Finite Element Poisson-Boltzmann Method

  62. Piotr Kmieć, Krzysztof Nowiński, Witold Rudnicki,Bogdan Lesyng, in: International Conference on Conformation of Peptides, Proteins and Nucleic Acids - Book of Abstracts, Uniwersytet Gdański (2000), 77-77
     
  63. Structure-based sequence alignment for the beta-trefoil subdomain of the clostridial neurotoxin family: implication for its putative ganglioside binding site

  64. Krzysztof Ginalski, C Venclovas, Bogdan Lesyng, K Fidelis, in: International Conference on Conformation of Peptides, Proteins and Nucleic Acids, (2000), 51-51
     
  65. Wavelet Bases for IR Library Compression, Searching and Reconstruction

  66. B Walczak, Jan Radomski, in: Wavelets in Chemistry, ELSEVIER (2000), 291-310